Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs972221 chr3:16046283 C/T 6.9E-5 282 20.4 26.57 25.58 KM Plot
KIRP rs9727060 chr1:232228593 C/A 0.000189 286 18.4 26.57 26.37 KM Plot
KIRP rs9727061 chr1:232228597 C/T 0.000189 286 18.4 26.57 26.37 KM Plot
KIRP rs9730806 chr10:43219070 G/A 6.87E-5 289 25.57 27.47 11.43 KM Plot
KIRP rs9747334 chr17:80840989 C/T 1.95E-6 276 26.37 22.8 16.77 KM Plot
KIRP rs9787682 chr10:43084736 T/C 6.59E-5 288 25.58 26.83 11.43 KM Plot
KIRP rs9794011 chr1:4006306 A/G 0 276 24.73 35.33 4.07 KM Plot
KIRP rs9817244 chr3:124629059 G/A 9.49E-6 281 26.2 21.9 16.4 KM Plot
KIRP rs9821375 chr3:16046793 G/T 5.71E-5 283 20.4 26.57 25.57 KM Plot
KIRP rs9823018 chr3:13603323 C/G 2.44E-5 289 16.77 25.85 26.4 KM Plot
KIRP rs9843012 chr3:124565538 T/C 0.000132 286 26.07 26.38 16.47 KM Plot
KIRP rs9847614 chr3:124609945 G/A 1.27E-5 283 25.93 25.7 16.4 KM Plot
KIRP rs9861922 chr3:124648134 C/T 9.35E-5 285 26.07 25.7 17.9 KM Plot
KIRP rs9874118 chr3:124516793 T/C 1.12E-6 282 25.63 27.13 16.4 KM Plot
KIRP rs9878307 chr3:108166340 G/A 2.53E-5 283 25.42 26.83 12.1 KM Plot